Symptoms After Going "Gluten Free"? Here's Why - Amy Burkhart, MD, RD (2024)

By Amy Burkhart MD, RD

On a gluten-free diet, but still have symptoms?

Do you have gluten sensitivity or celiac disease? Have you removed gluten from your diet and still don’t feel 100 percent? Here are the top 5 reasons you may not be feeling well even when gluten is out of the picture.

1. You are getting gluten in the diet, intentionally or not.

Gluten sneaking into the diet, either by cross-contamination or intentional ingestion, is by far the leading cause of ongoing symptoms in patients starting a gluten-free diet. Some people mistakenly assume “a little won’t hurt” as the diet can be challenging. These small amounts may be to blame for continued symptoms. Small amounts are more likely to affect someone with celiac disease than someone who has gluten sensitivity. But, some people with gluten sensitivity are sensitive to small amounts of gluten as well.

Getting gluten accidentally occurs for various reasons, such as cross-contamination from toasters, cookware, or cutting boards. It may happen due to well-meaning “gluten eating” family members who aren’t familiar with avoiding cross-contamination. Symptoms may be from hidden gluten in products, cross-contamination, or misreading or misunderstanding labels. Cross-contamination when dining out is common-decrease this risk by using my free worldwide 100% gluten-free restaurant guide. It is searchable by location.

There are several other reasons for accidental gluten ingestion, and it often requires being a bit of a detective. This is best be accomplished with the help of a dietitian or health care professional trained in gluten-free diets if the answer is not easily uncovered on your own.

Lactose intolerance symptoms and gluten symptoms can be similar

Lactose is a sugar found in milk. Lactase is an enzyme that is used to digest the sugar. The enzyme is found on the very tip of the villi of the small intestine.

Villi are finger-like projections in the intestine where absorption occurs. These villi are damaged in newly diagnosed celiac patients and possibly in gluten sensitivity. When this happens, the enzyme is “washed away” and is not there to digest the lactose (milk sugar).

This creates symptoms of painful gas, bloating, and diarrhea. Often, after some time on a gluten-free diet (it may be months), the enzyme comes back as the villi repair. Dairy products can once again be introduced into the diet.

Sometimes, however, this doesn’t happen, and patients are forced to use a lactase supplement or avoid dairy altogether. Some patients find they can tolerate products such as yogurt or kefir in which the sugar (lactose) is “predigested.”

3. Vitamin And Mineral Deficiencies

Most doctors fail to do vitamin blood tests

Often, at the time of diagnosis people have been ill for a very long time. Due to this delay in diagnosis, many patients have a lengthy period of malabsorption of vitamins and minerals. The intestines have not been working properly under the constant barrage of gluten ingestion.

Many practitioners fail to test for common nutrient deficiencies associated with celiac disease or gluten sensitivity.

The vitamins and minerals most commonly deficient are below, along with some common symptoms seen with these deficiencies. This list is by no means comprehensive or exclusive.

Iron-Fatigue, cold intolerance (feels excessively cold with mild decreases in temperature), poor appetite, pale skin, headaches, dizziness, shortness of breath

Vitamin D- These symptoms can be nonspecific and vague: bone pain, weakness, depression, fatigue, poor concentration, and joint pain.

Folate-Fatigue, headache, anemia, palpitations, depression, difficulty concentrating, memory problems, sore tongue, gastrointestinal symptoms such as diarrhea, nausea, vomiting

Vitamin B12-Anemia, weakness, fatigue, pale skin, sore tongue, balance problems, tingling in fingers or toes, mood changes, depression

Magnesium-Fatigue, constipation, insomnia, muscle spasms or twitches, anxiety, hyperactivity, headaches

4. Other Food Sensitivities or Intolerances

Many patients experience ongoing symptoms due to other foods they are eating.

They may have symptoms due to other food intolerances that disappear when the particular food is eliminated from the diet.

Symptoms can range from fatigue, “brain fog,” joint pains, migraines, rashes, and digestive symptoms to many others. Common problem foods are dairy, soy, eggs, nuts, nightshades, and corn, but any food can cause a particular person’s symptoms.

It requires a bit of detective work on the part of the patient and practitioner to figure out what the actual culprit or culprits are, but the results can be quite rapid and dramatic once the instigating foods are found.

In addition to specific foods, there are several other types of common intolerances:

  • Oats:Oats can be cross-contaminated with gluten and cause symptoms. In addition, some celiac patients react to oats, even gluten-free oats, in a manner similar to gluten. See my article on oats and gluten for clarification.
  • Fructose Malabsorption: A 2020 Study showed 18/20 participants with celiac disease on a GF diet had ongoing symptoms due to other food intolerances. Seven had fructose malabsorption, and more than 50% had histamine intolerance.
  • Histamine Intolerance– Headaches and rashes are common symptoms of histamine intolerance-an issue seen in people with digestive problems. A low histamine diet can be helpful.
  • FODMAP Intolerance: Another vital cause of ongoing symptoms is FODMAP intolerance. This is common in people with celiac disease and is blamed for most gluten sensitivity cases. FODMAP intolerance creates symptoms such as bloating, gas, and diarrhea even after eliminating gluten. This is because many other foods beyond wheat contain FODMAP sugars. Information on the Low FODMAP diet is here. Talk to your doctor further about diagnosing and treating other food sensitivities.
  • Sucrose Intolerance: Sucrose, aka ordinary white table sugar, causes diarrhea, gas, and bloating. It was considered rare, but new research shows it is more common than previously thought, especially in people with underlying digestive problems.

5. Small Intestinal Bacterial Overgrowth (SIBO)

Too many bacteria in the small intestine causes problems

SIBO is an overgrowth of bacteria in the small intestine that wreaks havoc on the digestive tract and a person’s well-being.

If SIBO goes unchecked, it can cause malabsorption of nutrients in addition to symptoms such as gas, bloating, diarrhea, and discomfort. Symptoms often worsen after the ingestion of carbohydrates and can be progressive throughout the day.

Diagnosis is made by a hydrogen breath test, although some practitioners will treat based on history alone. SIBO can also commonly be the underlying cause of histamine intolerance.

Treatment varies from patient to patient but may include diet changes, probiotics, supplements, and antibiotics.

Recap Of Reasons For Ongoing Symptoms

Up to 40% of people with celiac disease have symptoms after starting a gluten-free diet. The number is unknown for gluten sensitivity.
  1. Accidental or intentional gluten intake: This is the most common reason
  2. Lactose intolerance: This is common in the general population. In people requiring a gluten-free diet, it is even more prevalent
  3. Vitamin deficiencies: Ask your provider to check for common vitamin deficiencies- D, Iron, B12, Folate, Zinc, and Vitamin E are the most commonly low
  4. Other food intolerances: These are real, and it requires some detective work to figure them out
  5. SIBO: Small intestinal bacterial overgrowth can cause significant symptoms. Bring up the topic if it has not been mentioned.
Symptoms After Going "Gluten Free"? Here's Why - Amy Burkhart, MD, RD (2024)

FAQs

Why do I feel worse after going gluten-free? ›

Some people report feeling dizziness, nausea, extreme hunger and even anxiety and depression when they suddenly go from eating a lot of gluten to being gluten-free. These symptoms usually go away after a few weeks on a gluten-free diet, but talk to your health care provider if they persist.

What are the symptoms after gluten-free diet? ›

FODMAP intolerance creates symptoms such as bloating, gas, and diarrhea even after eliminating gluten. This is because many other foods beyond wheat contain FODMAP sugars. Information on the Low FODMAP diet is here. Talk to your doctor further about diagnosing and treating other food sensitivities.

How long after stopping gluten do symptoms go away? ›

After you stop eating foods with gluten, your symptoms will likely get better in a few days to weeks. Your small intestine should heal completely in 3 to 6 months.

Can going gluten-free cause digestive problems? ›

However, the gluten-free diet also can cause undesirable side effects. For example, you may find you suffer more from constipation since many gluten-free foods, such as packaged snacks, contain little fiber. You also may also find you are more susceptible gluten cross-contamination.

Why does my stomach feel weird after going gluten-free? ›

In addition, the introduction of the many refined gluten free grains and starches that are in gluten free products are often upsetting to the micro-flora balance in the intestines, causing gas and bloating.

Why am I so tired after going gluten-free? ›

Low on iron – Anaemia is also a common problem among those who cannot have gluten, so a lack of iron could be the cause of feeling tired. Too much starch – Using starchy foods such as potatoes to make up your carbohydrate intake, can also lead you to feel tired and sluggish.

What are the negative side effects of a gluten-free diet? ›

Numerous studies have shown that diets that are gluten free tend to be deficient in protein, folate, iron, niacin, riboflavin, thiamin, B12, zinc, selenium, and fiber. In addition, they are more apt to have higher levels of nickel, which is highly allergenic to some patients.

How long does it take for your body to adjust to a gluten-free diet? ›

Your symptoms should improve considerably within weeks of starting a gluten-free diet. However, it may take up to a few years for your digestive system to heal completely. A GP will offer you an annual review during which your height and weight will be measured and your symptoms reviewed.

Why am I so gassy after going gluten-free? ›

Another thing to keep in mind is that gluten-free foods are generally higher in starch and lower in fiber. This can cause problems for some with symptoms such as constipation, gas and bloating.

How do you flush gluten out of your system? ›

There is no way to “flush” gluten out of your system quickly to lessen the discomfort. Finding the best ways to reduce the symptoms in case you get glutened – and being prepared – can help minimize the fear of getting sick. It may happen, but when you are prepared, it can be less stressful.

How long does it take your gut to heal after going gluten-free? ›

Some evidence suggests the small intestine may heal completely within 3 to 6 months, though adults diagnosed at an older age could take up to 2 years to fully heal.

How long does it take to detox your body from gluten? ›

Individuals without a gluten intolerance, wheat allergy, or celiac disease have a gluten transit time of up to 4 hours in the stomach, 6 hours in the small intestine, and 59 hours in the colon. Therefore, it takes 2-3 days for your system to eliminate gluten entirely.

How to know if a gluten-free diet is working? ›

What are the signs that your gluten-free diet is working?
  1. Fewer gut symptoms. A gluten-free diet can improve your digestive symptoms. ...
  2. More energy. Once you start a gluten-free diet, your small intestine starts to repair itself. ...
  3. Stable body weight. ...
  4. Higher bone density. ...
  5. Improved mood. ...
  6. Clearer skin.
Sep 15, 2022

How long does gluten fatigue last? ›

How Long Until Symptoms Improve? Many people report digestive symptom improvement within a few days of dropping gluten. Fatigue and brain fog often start getting better in the first week or two. This is a gradual process, though.

What does gluten-free do to your gut? ›

Overall, these studies show that dysbiosis of the gut microbiota seen in celiac disease patients is not fully reversed by the adoption of a gluten-free diet. In conclusion, these studies show that a gluten-free diet can cause changes in the gut microbiota, and that this could potentially be harmful.

What are the withdrawal effects of gluten? ›

When gluten is withdrawn abruptly from the diet, certain susceptible individuals may experience a wide range of withdrawal symptoms, including, but not limited to, nausea, extreme hunger, anxiety, depression and dizziness.

Why is a gluten-free diet bad for you? ›

Gluten Free Diets May be Nutritionally Inferior

These diets may also contain higher levels of arsenic, mercury, cadmium, lead, and higher levels of fat, saturated fats, and cholesterol.

What happens when you eat gluten after not eating it for a while? ›

Symptoms of glutening are often digestive (abdominal pain, diarrhea, and constipation). However, gluten exposure can also cause headaches, anxiety, brain fog, skin rashes, or problems with a variety of body systems. These symptoms can last for days or weeks.

Can going gluten free affect your mood? ›

Yes, you should expect some emotional swings during your first few months on the diet (especially if you experience depression from gluten, as some people do). 1 But overall, your mood should be on an upward trajectory as your health improves and you learn how to follow the diet more easily.

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